https://oldwiki.miniscope.org/api.php?action=feedcontributions&feedformat=atom&user=Bbrown 2026-04-05T18:01:16Z User contributions MediaWiki 1.27.7 https://oldwiki.miniscope.org/index.php?title=Other_Open_Source_Projects&diff=1721 2018-03-21T23:25:55Z

<p>Bbrown: /* Constrained Nonnegative Matrix Factorization for microEndoscopic data */ Adding new analysis package, CaImAn</p> <hr /> <div>Listed below are open-source projects being tackled by other groups. <br /> <br /> == Miniscope Baseplate and Protective Cone for Rats by Bastijn van den Boom at NIN ==<br /> Description, pictures, drawings, and part files for a Miniscope baseplate and protective cone.<br /> <br /> [[Miniscope Baseplate and Protective Cone for Rats]]<br /> <br /> == Miniscope Gripper by Bastijn van den Boom at NIN ==<br /> Description, pictures, drawings, and part files for a Miniscope gripper for holding the Miniscope while baseplating.<br /> <br /> [[Miniscope Gripper]]<br /> <br /> == Miniscope Bonsai Package by Jon Newman ==<br /> &quot;Bonsai package for controlling and acquiring data from headborne miniscopes for calcium imaging&quot;<br /> <br /> [https://github.com/jonnew/Bonsai.Miniscope Bonsai.Miniscope]<br /> <br /> == Constrained Nonnegative Matrix Factorization for microEndoscopic data ==<br /> Analysis package for (1) identifying spatial footprints of all neurons and (2) denoising, demixing and deconvolving the temporal signals.<br /> <br /> [[CNMF-E]]<br /> https://github.com/zhoupc/CNMF_E (Matlab)<br /> <br /> <br /> CaImAn https://github.com/flatironinstitute/CaImAn (Python)<br /> <br /> == Miniature Microscope from the Gardner Lab at Boston University ==<br /> [[Gardner Lab Miniature Microscope]]<br /> <br /> == Open-Ephys ==<br /> &quot;A team of neuroscientists who want to change the way our tools are developed and shared.&quot;<br /> <br /> [http://www.open-ephys.org/ Open Ephys]<br /> <br /> == OpenMaze ==<br /> &quot;Open source hardware and software for behavioral neuroscience. Learn how to design and build fully functional animal behavioral setups rapidly, cheaply, and easily.&quot;<br /> <br /> [http://claylacefield.wix.com/openmazehome OpenMaze]<br /> <br /> == Open Behavior ==<br /> &quot;Open Behavior is dedicated to accelerating behavioral neuroscience research through the promotion of collaboration and open-source projects.&quot;<br /> <br /> [http://openbehavior.com/ Open Behavior]</div>

Bbrown